[BioC] Package for Agilent microdata

[Wolfgang Huber]

Hersh scripsit 17/03/10 12:05:
> Dear All
> 
> We have tiling array data for nucleosome postions done on Agilent Microarray
> platform with 60mers. Is there any package which can be used for this data
> analysis?
> 
> Thanks
> Hersh
> 

There are multiple relevant packages, perhaps this article can provide a 
start:

Analyzing ChIP-chip Data Using Bioconductor
PLoS Comput Biol. 2008 November; 4(11): e1000227.
Joern Toedling* and Wolfgang Huber
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2582686/


Best wishes
      Wolfgang


--
Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber/contact