[BioC] AgiMicroRna package is not available at bioconductor or not in active form???
seandavi at gmail.com
Wed Mar 17 10:10:21 CET 2010
On Wed, Mar 17, 2010 at 3:50 AM, neeraj rana <kushrn at gmail.com> wrote:
> i install the R package R.2.10.0 for windows.And then i tried to install
> bioconductor package ,but it is not installing.It's showing this error
> Error in file(file, "r", encoding = encoding) :
> cannot open the connection
> In addition: Warning message:
> In file(file, "r", encoding = encoding) :
> unable to connect to 'bioconductor.org' on port 80.
Are you behind a firewall? Is your network connection working?
> On Tue, Mar 16, 2010 at 4:06 PM, Sean Davis <seandavi at gmail.com> wrote:
>> On Tue, Mar 16, 2010 at 6:24 AM, neeraj rana <kushrn at gmail.com> wrote:
>> > hi,
>> > i need to analyse Agilent microrna microarray by the package AgiMicroRna
>> > ,i
>> > tried it to intstall but the msz came
>> >> source("http://bioconductor.org/biocLite.R")
>> > Warning messages:
>> > 1: In safeSource() : Redefining ‘biocinstall’
>> > 2: In safeSource() : Redefining ‘biocinstallPkgGroups’
>> > 3: In safeSource() : Redefining ‘biocinstallRepos’
>> >> biocLite("AgiMicroRna")
>> > Using R version 2.9.2, biocinstall version 2.4.13.
>> > Installing Bioconductor version 2.4 packages:
>> >  "AgiMicroRna"
>> > Please wait...
>> > Warning message:
>> > In getDependencies(pkgs, dependencies, available, lib) :
>> > package ‘AgiMicroRna’ is not available
>> > Please let me know whethr it is available or not,or any alternative ??
>> Hi, Neeraj.
>> AgiMicroRna became available only in Bioconductor 2.5, which
>> corresponds to R-2.10. You will need to upgrade your R to the newest
>> version in order to use AgiMicroRna.
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