[BioC] unable to load rtracklayer after install Iranges 1.5.56

[Patrick Aboyoun]

Sabrina,
You have unfortunately "crossed the streams" by mixing the IRanges 
package from BioC 2.6 with R 2.10 for which BioC 2.5 packages are 
supported. If you want to use the IRanges package from BioC 2.6, you 
need first to upgrade to R-devel, then use biocLite to reinstall the 
BioC packages you are using.


Cheers,
Patrick



On 3/10/10 6:24 AM, sabrina s wrote:
> Hi, all:
> In order to solve some problems I have with findOverlaps results, I
> installed IRanges_1.5.56 version from .zip file. After that, I can not load
> rtracklayer , I have the following error:
>
>    
>> library(rtracklayer)
>>      
> library(rtracklayer)
> Loading required package: RCurl
> Loading required package: bitops
> Error in sub("([^-]+)_.*", "\\1", info$pkgname) :
>    7 arguments passed to .Internal(sub) which requires 8
> Error : unable to load R code in package 'Biostrings'
> Error: package/namespace load failed for 'rtracklayer'
>
>
> R version 2.10.1 (2009-12-14)
> i386-pc-mingw32
>
> locale:
> [1] LC_COLLATE=English_United States.1252
> [2] LC_CTYPE=English_United States.1252
> [3] LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] IRanges_1.5.56 RCurl_1.3-1    bitops_1.0-4.1
>
> loaded via a namespace (and not attached):
> [1] Biobase_2.6.1 XML_2.6-0
>    
>>      
>
> Can any one tell me how to solve this problem?
>
> Thanks!
>
>
>
>