[BioC] unable to load rtracklayer after install Iranges 1.5.56
paboyoun at fhcrc.org
Wed Mar 10 18:18:28 CET 2010
You have unfortunately "crossed the streams" by mixing the IRanges
package from BioC 2.6 with R 2.10 for which BioC 2.5 packages are
supported. If you want to use the IRanges package from BioC 2.6, you
need first to upgrade to R-devel, then use biocLite to reinstall the
BioC packages you are using.
On 3/10/10 6:24 AM, sabrina s wrote:
> Hi, all:
> In order to solve some problems I have with findOverlaps results, I
> installed IRanges_1.5.56 version from .zip file. After that, I can not load
> rtracklayer , I have the following error:
> Loading required package: RCurl
> Loading required package: bitops
> Error in sub("([^-]+)_.*", "\\1", info$pkgname) :
> 7 arguments passed to .Internal(sub) which requires 8
> Error : unable to load R code in package 'Biostrings'
> Error: package/namespace load failed for 'rtracklayer'
> R version 2.10.1 (2009-12-14)
>  LC_COLLATE=English_United States.1252
>  LC_CTYPE=English_United States.1252
>  LC_MONETARY=English_United States.1252
>  LC_NUMERIC=C
>  LC_TIME=English_United States.1252
> attached base packages:
>  stats graphics grDevices utils datasets methods base
> other attached packages:
>  IRanges_1.5.56 RCurl_1.3-1 bitops_1.0-4.1
> loaded via a namespace (and not attached):
>  Biobase_2.6.1 XML_2.6-0
> Can any one tell me how to solve this problem?
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