[BioC] KEGGgraph fails on a KEGG XML file

[Seth Falcon]

On 3/5/10 11:57 AM, Rajarshi Guha wrote:
> Hi, I'm using KEGGgraph on R 2.9.0 (64 bit) on OS X 10.5.7. When
> trying to read in the KEGG XML for hsa00051, I get the following
> message:
>
>> parseKGML2Graph('hsa00051.xml', genesOnly=FALSE)
> Error in UseMethod("xmlAttrs", node) :
>    no applicable method for "xmlAttrs"
>
>
> Has anybody seen this before?

That error looks slightly familiar.  I would try installing the latest 
XML package.  And I would also recommend upgrading to the latest R 
release and installing the newer Bioconductor packages.

+ seth


-- 
Seth Falcon | @sfalcon | http://userprimary.net/user