[BioC] KEGGgraph fails on a KEGG XML file

Seth Falcon seth at userprimary.net
Fri Mar 5 23:40:14 CET 2010

On 3/5/10 11:57 AM, Rajarshi Guha wrote:
> Hi, I'm using KEGGgraph on R 2.9.0 (64 bit) on OS X 10.5.7. When
> trying to read in the KEGG XML for hsa00051, I get the following
> message:
>> parseKGML2Graph('hsa00051.xml', genesOnly=FALSE)
> Error in UseMethod("xmlAttrs", node) :
>    no applicable method for "xmlAttrs"
> Has anybody seen this before?

That error looks slightly familiar.  I would try installing the latest 
XML package.  And I would also recommend upgrading to the latest R 
release and installing the newer Bioconductor packages.

+ seth

Seth Falcon | @sfalcon | http://userprimary.net/user

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