[BioC] KEGGgraph fails on a KEGG XML file
seth at userprimary.net
Fri Mar 5 23:40:14 CET 2010
On 3/5/10 11:57 AM, Rajarshi Guha wrote:
> Hi, I'm using KEGGgraph on R 2.9.0 (64 bit) on OS X 10.5.7. When
> trying to read in the KEGG XML for hsa00051, I get the following
>> parseKGML2Graph('hsa00051.xml', genesOnly=FALSE)
> Error in UseMethod("xmlAttrs", node) :
> no applicable method for "xmlAttrs"
> Has anybody seen this before?
That error looks slightly familiar. I would try installing the latest
XML package. And I would also recommend upgrading to the latest R
release and installing the newer Bioconductor packages.
Seth Falcon | @sfalcon | http://userprimary.net/user
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