[BioC] chip-chip data

Sean Davis seandavi at gmail.com
Fri Mar 5 02:17:12 CET 2010

On Thu, Mar 4, 2010 at 7:27 PM, somnath bandyopadhyay
<genome1976 at hotmail.com> wrote:
> Hi there,
> I am trying to analyze chip-chip data from Nimblegen 385k arrays for histone methylated regions. I have replicates from both wild type and knock out cells with separate inputs (controls) for the KO and WT. That makes a total of 12 arrays. I was wondering if anybody could help me in pointing at the right package or tools. I am new to chip-chip data.

Hi, Somnath.  Off the top of my head, you could check out the Ringo,
Starr, BAC, or ACME packages; there may be others.


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