[BioC] Problem with illuminaMousev2BeadID.db

Marc Carlson mcarlson at fhcrc.org
Tue Jul 20 22:41:37 CEST 2010


It seems that the "org" dependency is not in place.  Use BiocLite to
install "org.Mm.eg.db"

source("http://bioconductor.org/biocLite.R")
biocLite("org.Mm.eg.db")


  Marc


On 07/20/2010 08:37 AM, Yanji Xu wrote:
> Hi,
>
> I installed illuminaMousev2BeadID.db from BioConductor, but got problem of loading the db.  Below is the error message I got and the R version I'm using.  Is there any solution for this problem?
>
> Thanks,
> Yanji
>
>   
>> library("illuminaMousev2BeadID.db")
>>     
> Error : .onLoad failed in loadNamespace() for 'illuminaMousev2BeadID.db', details:
>   call: sqliteExecStatement(con, statement, bind.data)
>   error: RS-DBI driver: (error in statement: no such table: org_Mm_eg.chrlengths)
> Error: package/namespace load failed for 'illuminaMousev2BeadID.db'
>   
>> R.Version()
>>     
> $platform
> [1] "i386-apple-darwin9.8.0"
>
> $arch
> [1] "i386"
>
> $os
> [1] "darwin9.8.0"
>
> $system
> [1] "i386, darwin9.8.0"
>
> $status
> [1] ""
>
> $major
> [1] "2"
>
> $minor
> [1] "11.1"
>
> $year
> [1] "2010"
>
> $month
> [1] "05"
>
> $day
> [1] "31"
>
> $`svn rev`
> [1] "52157"
>
> $language
> [1] "R"
>
> $version.string
> [1] "R version 2.11.1 (2010-05-31)"
>
>
> 	[[alternative HTML version deleted]]
>
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