[BioC] Rsamtools: Sorting BAM files

Thomas Unterthiner thomas.unterthiner at students.jku.at
Tue Jul 20 15:50:54 CEST 2010


Hi there!

I need to sort BAM files. I am aware of 'samtools sort ...', but being able
to do this in R (w/o dependence on an external tool like samtools) would 
suit
my workflow much better.

Are there any plans to integrate this sorting functionality into Rsamtools?

Cheers

Thomas



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