[BioC] Rgraphviz in windows 7 - problem with GUI?
Hervé Pagès
hpages at fhcrc.org
Tue Jul 13 02:15:02 CEST 2010
Hi Neta,
The Rgraphviz binary package for 32-bit Windows that is included
in BioC 2.6 (the current release version of Bioconductor) should
work fine. See the daily build/check results here:
http://bioconductor.org/checkResults/2.6/bioc-LATEST/Rgraphviz/liverpool-checksrc.html
Note the following info from the report:
Using the following environment variables
GRAPHVIZ_INSTALL_DIR=C:\/Graphviz2.20
GRAPHVIZ_INSTALL_MAJOR=2
GRAPHVIZ_INSTALL_MINOR=20
GRAPHVIZ_INSTALL_SUBMINOR=3
Make sure you use this version of graphviz. Also make sure you use
R-2.11.1 + BioC 2.6 as we don't support older versions of R/BioC.
Cheers,
H.
On 07/09/2010 11:19 AM, Neta Zuckerman wrote:
> Hello,
>
> I am desperately seeking help to install Rgraphviz correctly.
> I have tried several graphviz versions as well as several R and bioconductor
> versions, as suggested in some of the mails on this list, with no luck.
> I finally succeeded installing Rgraphviz without any error messages using R:
> version 2.10 (bioconductor version 2.5), and graphviz: version 2.21
> However, when I use the function plot to plot a graph object, I receive the
> following error message from windows:
> "R for windows GUI front-end has stopped working. a problem caused the
> program to stop working correctly windows will close the program and notify
> you if a solution is available".
>
> can anyone recommend a solution?
> Thank you,
> Neta.
>
> [[alternative HTML version deleted]]
>
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--
Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpages at fhcrc.org
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Fax: (206) 667-1319
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