[BioC] SNP chip

Adrian Johnson oriolebaltimore at gmail.com
Thu Jul 8 18:59:42 CEST 2010


Hi:


I have a snp array 6 (affymetrix) data table that looks like the following:


SNPID	                Call
SNP_A-8373748	BB
SNP_A-2210818	AB
SNP_A-4290346	BB
SNP_A-2219708	AA


I want to be able to convert this data into a .BED file like format
that will look like following:

Chromosome     Position        Reference Base       Call
chr19                2094894             A                        T
chr19                2095300             G                        A


Is it possible through bioconductor?  Thanks for your time.

-Adrian



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