[BioC] xps: root.profile on a asubset of the data
cstrato
cstrato at aon.at
Fri Aug 20 17:06:22 CEST 2010
Dear Daniel,
You can simply use parameter "treename" to plot only a subset of trees,
see "?root.profile".
Best regards
Christian
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C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l: cstrato at aon.at
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On 8/20/10 4:47 PM, Daniel Brewer wrote:
> Hello,
>
> I am using xps to do some quality control on an Affymetrix exon array
> experiment I am looking at. I am trying to use the ROOT graphics to
> plot density boxplots of the raw intensities (using root.profile). The
> problem is that there is too many arrays to look reasonable on one plot.
> Is there a way to split up the dataset into smaller pieces and plot them?
>
> Thanks
>
> Dan
>
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