[BioC] package for pathway analysis

[Richard Friedman]

Dawn,

	I don't know about in bioconductir, but  I have found the Pathway  
express
web tool

http://vortex.cs.wayne.edu/projects.htm

  very useful.

Best wishes,
Rich
------------------------------------------------------------
Richard A. Friedman, PhD
Associate Research Scientist,
Biomedical Informatics Shared Resource
Herbert Irving Comprehensive Cancer Center (HICCC)
Lecturer,
Department of Biomedical Informatics (DBMI)
Educational Coordinator,
Center for Computational Biology and Bioinformatics (C2B2)/
National Center for Multiscale Analysis of Genomic Networks (MAGNet)
Room 824
Irving Cancer Research Center
Columbia University
1130 St. Nicholas Ave
New York, NY 10032
(212)851-4765 (voice)
friedman at cancercenter.columbia.edu
http://cancercenter.columbia.edu/~friedman/

In Memoriam,
George Scithers



On Aug 8, 2010, at 6:50 AM, Dawn wrote:

> Hi,
>
> I have two groups(one is for control) of genomic data and try to do
> metabolic pathway analysis using Bioconductor. Would you please give  
> me some
> suggestion about what packages I should use and the information  
> about how I
> can start (e.g., the tutorial )? I hope to see which genes are up  
> and down
> in particular pathwa*y such as the insulin pathway.*
> *
> *
> *Thank you very much!*
> *Dawn*
>
> 	[[alternative HTML version deleted]]
>
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