[BioC] Accessing COG/KOG database through Bioconductor

Marc Carlson mcarlson at fhcrc.org
Thu Oct 29 00:10:34 CET 2009

Hi Javier,

There is not presently a package like this that I know of.  But there
are a set of inparanoid packages which could be similar enough to be
helpful for you.  You might want to peek at hom.Hs.inp.db for a quick
example.  If you have a use case that is not solvable by using
inparanoid data, I would certainly be open to considering support for
COGs as well.  Perhaps we can take this discussion offline and discuss
the possibilities?


Javier Pérez Florido wrote:
> Dear list,
> Is there any package / function that accesses to the Eukaryotic
> Orthologous Groups (KOG) database? I've searched on the web and in
> Bioconductor but no answer was found...
> Thanks in advance,
> Javier
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