[BioC] SNP to Gene mapping (GWAS)

Paul Leo p.leo at uq.edu.au
Mon Oct 26 01:42:34 CET 2009

This works for me, will give you Vega 35

getBM(mart=mart, filters="refsnp", value="rs3094315",
       attr=c("chr_name", "chrom_start",

your could could dump the parts of org.Hs that you want to a table and
keep that...

-----Original Message-----
From: Tim Smith <tim_smith_666 at yahoo.com>
To: Sean Davis <seandavi at gmail.com>
Cc: Vincent Carey <stvjc at channing.harvard.edu>, bioc
<bioconductor at stat.math.ethz.ch>
Subject: Re: [BioC] SNP to Gene mapping (GWAS)
Date: Sun, 25 Oct 2009 17:20:44 -0700 (PDT)

getBM(mart=mart49, filters="refsnp", value="rs3094315",
       attr=c("chr_name", "chrom_start",

More information about the Bioconductor mailing list