[BioC] Querying dbSNP

Dr. Sanjay Bhatikar sanjay.bhatikar at biobase-international.com
Wed Oct 21 09:07:17 CEST 2009

   HI Sharon,
       why not consumer their web-service in a Perl script with SOAP? You can
   pipe data to R from Perl to perform any analytics that you may need.
   - SanjaY
   Marc Carlson wrote:

Hi Sharon,

It's not clear to me from your email what you intend to do, but I know
that some dbSNP data is available as a UCSC track and should therefore
be obtainable by using the rtracklayer package.


Sharon wrote:

Dear All,

Is there any tool in Bioconductor to query dbSNP? I know that (correct me,
if I am wrong) biomaRt is primarily for Ensemble.

Thanks in advance.

Kind regards,

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