[BioC] Affy miRNA

Chao-Jen Wong cwon2 at fhcrc.org
Thu Oct 15 20:37:01 CEST 2009

Hi, Lana

As far as I know, Bioconductor does not have a package for Affy miRNA
chip yet.   There is a package for Agilent miRNA chips (available from
BioC 2.5) using rma for normalization.  I would also be interested in
any suggestions for nomarlization for Affy miRNA chips.

Lana Schaffer wrote:
> Hi,
> Is there Bioconductor software for the new Affy miRNA chip?
> Does someone have experience normalizing the Affy miRNA chip?
> Any suggestions? 
> Lana Schaffer
> Biostatistics/Informatics
> The Scripps Research Institute
> DNA Array Core Facility
> La Jolla, CA 92037
> (858) 784-2263
> (858) 784-2994
> schaffer at scripps.edu 
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Chao-Jen Wong
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Avenue N., M2-B876
PO Box 19024
Seattle, WA 98109
cwon2 at fhcrc.org

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