[BioC] Determining which comparisons show significant difference Multi-class SAM

elliott harrison e.harrison at epistem.co.uk
Fri Oct 2 11:15:42 CEST 2009

Hi BioC,

I've had a good hunt through the documentation but can't find a solution
to this.
Is it possible to determine between which classes a probes has a delta
value above the threshold and perhaps output that along with the
significant probes?

For example

Say the following design

cl <-
sam.out <- sam(eset.rma, cl, rand = 123)

Can I extract sat and list of 1-3,1-7 showing a probe was differential
for those comparisons from the sam.out object?

Many thanks


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