[BioC] clustalW

[Thomas Girke]

Here are a few simple examples for handling and manipulating 
multiple and pairwise sequence alignments using Biostring's 
XStringSet class:
http://htseq.ucr.edu/#MultipleSequenceAlignments.28MSAs.29

Thomas


On Fri, Nov 20, 2009 at 06:53:26AM -0800, Michael Lawrence wrote:
> On Fri, Nov 20, 2009 at 12:52 AM, John Lande <john.lande77 at gmail.com> wrote:
> 
> > dear all,
> >
> > is there a an implementation of clustalw in bioconductor?
> >
> >
> >
> No, but I've had success with running clustalw via system(), configuring it
> to use fasta for input and output.
> 
> 
> > --
> > John
> >
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> >
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> 	[[alternative HTML version deleted]]
> 
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