[BioC] BioMart error occurred again

Steve Lianoglou mailinglist.honeypot at gmail.com
Wed Nov 18 18:11:28 CET 2009


Hi,

On Nov 18, 2009, at 11:38 AM, <mauede at alice.it> wrote:

> This time the following error occurred after roughly 7-hour no-stop  
> running.

You (still) haven't included the code/query you are sending that gets  
you this error.

What kind of query takes 7 hours to process? Anyway, if your query  
really is running this long, you could try to  break up the query to  
have it return results on subsets of your data at a time (perhaps on a  
chromosome by chromosome basis).

-steve

--
Steve Lianoglou
Graduate Student: Computational Systems Biology
   |  Memorial Sloan-Kettering Cancer Center
   |  Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact



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