[BioC] Error loading Affymetrix Human Genome U133plus2 Set annotation data
Lei Huang
lhuang7 at uic.edu
Mon Nov 16 22:22:44 CET 2009
Dear listers,
I received an error message when trying to load library(hgu133plus2.db)
> library(hgu133plus2.db)
Loading required package: AnnotationDbi
Loading required package: Biobase
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Loading required package: DBI
Error in sqliteFetch(rs, n = -1, ...) :
RSQLite driver: (RS_SQLite_fetch: failed first step: disk I/O error)
Error : .onLoad failed in 'loadNamespace' for 'hgu133plus2.db'
Error: package/namespace load failed for 'hgu133plus2.db'
> sessionInfo()
R version 2.9.0 (2009-04-17)
x86_64-redhat-linux-gnu
locale:
LC_CTYPE=en_US.iso88591;LC_NUMERIC=C;LC_TIME=en_US.iso88591;LC_COLLATE=en_US.iso88591;LC_MONETARY=C;LC_MESSAGES=en_US.iso88591;LC_PAPER=en_US.iso88591;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.iso88591;LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] RSQLite_0.7-3 DBI_0.2-4 AnnotationDbi_1.6.1
[4] Biobase_2.4.1
However I can successfully load library(hgu133a.db) and others. I logged
in as root to run the same command and got the same error. After looking
up Bioconductor mailing list archives I found few clue about this issue.
Could anyone give me a hint on solving the problem?
Thanks a lot,
Lei Huang
Bioengineering/Bioinformatics Program
University of Illinois at Chicago
821 S Wood Street, RM103
Chicago, IL 60612
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