[BioC] hclust to newick format?

[Julia Engelmann]

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Hi Michael,

check out:

library(ctc)
?hc2Newick

HTH,
Julia


michael watson (IAH-C) wrote:
> Hello
>
> I am asking the bioC list as it is more likely to contain
> biologists tha R-help!
>
> Has anyone written any code to convert an hclust object to newick
> format?
>
> For those of you who don't know, newick is a simple tree
> representation format used extensively in phylogenetic analysis:
>
> (B:6.0,(A:5.0,C:3.0,E:4.0):5.0,D:11.0);
>
> I am looking to see if certain statistical properties can be used
> in hclust which will mirror a phylogenetic tree based on DNA
> sequence, and for that I want to use some of the phylogenetic tree
> drawing tools on my hclust data, all of which accept newick as
> standard
>
> Thanks in advance
>
> Mick
>
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