[BioC] error installing R 2.9.1 from source on mac os 10.5?

[Patrick Aboyoun]

Jesper,
I don't know if you have subscribed to the R-SIG-Mac mailing list 
(r-sig-mac at stat.math.ethz.ch). I think you'll find answers flow more 
readily on that board if you post R installation issues on the Mac.


Patrick



Jesper Ryge wrote:
> hi 
>
> i get an error when trying to install R 2.9.1 from source on an intel mac os 10.5.7. i have 
> used the gcc4.2 from xcode 3.1 and gfortran 4.2 from http://r.research.att.com/tools/. i 
> also tried using gcc and gfortran 4.3 installed with macports. same error. im not an expert in 
> this and im a bit lost as to the "source" of my problem?   here follows some of the output 
> from configure and make: 
>
> ok-ulla:R-2.9.1 jr$ ./configure --with-blas='-framework vecLib' --with-aqua --enable-R-
> framework --enable-R-shlib
> checking build system type... i386-apple-darwin9.7.0
> checking host system type... i386-apple-darwin9.7.0
> loading site script './config.site'
> ...
> ...
> R is now configured for i386-apple-darwin9.7.0
>
>   Source directory:          .
>   Installation directory:    /Library/Frameworks
>
>   C compiler:                gcc -std=gnu99  -g -O2
>   Fortran 77 compiler:       gfortran  -g -O2
>
>   C++ compiler:              g++  -g -O2
>   Fortran 90/95 compiler:    gfortran -g -O2
>   Obj-C compiler:	     gcc -g -O2
>
>   Interfaces supported:      X11, aqua, tcltk
>   External libraries:        readline, BLAS(vecLib)
>   Additional capabilities:   PNG, JPEG, iconv, MBCS, NLS, cairo, ICU
>   Options enabled:           framework, R profiling, Java
>
>   Recommended packages:      yes
>
> R-2.9.1 jr$ sudo make
> make[1]: Nothing to be done for `R'.
> make[1]: Nothing to be done for `R'.
> make[2]: Nothing to be done for `R'.
> creating src/scripts/R.fe
> mkdir ../../bin
> mkdir ../../include
> mkdir ../../../include/R_ext
> making blocksort.d from blocksort.c
> making bzlib.d from bzlib.c
> making bzcompress.d from bzcompress.c
> ...
> ...
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -
> I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dynload.c -o dynload.o
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -
> I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c edit.c -o edit.o
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -
> I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c stubs.c -o stubs.o
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -
> I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c system.c -o system.o
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -
> I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c sys-unix.c -o sys-unix.o
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -
> I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c sys-std.c -o sys-std.o
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -
> I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c X11.c -o X11.o
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -
> I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c aqua.c -o aqua.o
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -
> I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c Rembedded.c -o Rembedded.o
> rm -rf libunix.a
> ar cr libunix.a dynload.o edit.o stubs.o system.o sys-unix.o sys-std.o X11.o aqua.o 
> Rembedded.o
> ranlib libunix.a
> make[3]: *** No rule to make target `install/R-2.9.1'.  Stop.
> make[2]: *** [R] Error 2
> make[1]: *** [R] Error 1
> make: *** [R] Error 1
>
> any help highly appreciated:-)
>
> cheers,
> jesper Ryge
> karolinska Institutet
>
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