[BioC] Fisher's test on my annotated categories

[Francois Pepin]

Hi Adrian,

One way would be use the Category package to use your own annotations. 
?hyperGTest can point you in the right direction, but it's not trivial 
if you're not familiar with R object-oriented programming.

In a hurry, I tend to just code it up myself and feed it through 
fisher.test.

I've been wanting to make hyperGTest work with GSEABase, but haven't had 
the time to do it yet.

Francois

Adrian Johnson wrote:
> Dear Group,
> is there any package in bioconductor that allows me to apply  Fishers
> exact test on my own annoated categories. I would be using the entire
> genome or chip as the reference.
> Thank you.
> Ad.
> 
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