[BioC] What should be the output after processing a cel file?
Peng Yu
pengyu.ut at gmail.com
Fri Jul 24 19:01:43 CEST 2009
Hi,
I run the following command in R.
library(oligo)
data<-oligo::read.celfiles("some.cel")
eset<-rma(data)
write.exprs(eset, file="some.txt", sep="\t")
It generate the file "some.txt". But I am not sure what it means. The
content of some.txt is the following.
wt1-mth_HZ_5238_MST1_19385.cel
10344615 7.83088386872146
10344617 3.13300493228193
10344619 3.00984893419684
10344621 4.55830890064195
10344623 7.79420011157519
10344625 8.93864799064523
10344626 10.2404135279143
10344627 8.36493644804453
10344628 10.8239110733786
I am wondering if I processed the cel file correctly. What does the
first column mean?
Regards,
Peng
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