[BioC] Genominator upgraded in the release branch

Kasper Daniel Hansen khansen at stat.berkeley.edu
Wed Dec 30 21:09:36 CET 2009


Genominator has been updated to 1.0.3 in the release version of Biconductor (2.5).  This fixes a broken build caused by the recent update of DBI on CRAN.

BUG FIXES
o The recently release of DBI version 0.2-5 on CRAN fixed a name mangling bug
  whereby a column name  of "end" would silently be changed to
  "end__1".  This columnname was used internally in Genominator so a
  change was warranted.  Genominator now depends explicitely on
  DBI >= 0.2-5. 
o An oversight in the vignette build process left a big temporary
  database in the build directory which was getting packaged as a part
  of the final build.  This has been fixed, reducing the size of
  the source tarball from 34M to 2M and also reducing the size of the
  installation by a similar amount.

Currently, we recommend serious users of Genominator to use the devel version (which implies using R-devel) due to recent feature improvements (and additional non-critical bugfixes), with more being planned for the immediate, post-holiday future.

Kasper



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