[BioC] make.cdf.package: Error: cannot allocate vector of size 1 Kb

Peng Yu pengyu.ut at gmail.com
Sun Dec 27 02:42:14 CET 2009


I run the following example. The cdf file is downloaded from the
following link. I'm wondering what the problem is with
make.cdf.package.

http://www.affymetrix.com/Auth/support/downloads/library_files/MoEx-1_0-st-v1.text.cdf.zip

$ Rscript MoEx-1_0-st-v1.cdf.R
> library(makecdfenv)
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
> sessionInfo()
R version 2.10.0 (2009-10-26)
x86_64-unknown-linux-gnu

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] makecdfenv_1.24.0 affyio_1.14.0     affy_1.24.2       Biobase_2.6.1

loaded via a namespace (and not attached):
[1] preprocessCore_1.8.0
> make.cdf.package('MoEx-1_0-st-v1.text.cdf', species='Mus_musculus')
Reading CDF file.
Error: cannot allocate vector of size 1 Kb
Execution halted



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