[BioC] TSS Regions

Julie Zhu julie.zhu at umassmed.edu
Fri Dec 11 04:07:43 CET 2009

Hi Arnaud,

The function annotatePeakInBatch in ChIPpeakAnno package will do.


On 12/10/09 2:58 PM, "Droit Arnaud" <Arnaud.Droit at ircm.qc.ca> wrote:

> Hello everyone,
> We have identified different regions of transcription factor. We have strand,
> start and end position of these motifs in IRanges object.
> I would like to find the TSSs near my transcription factor. I am wondering if
> anyone knows a method or a package to find them.
> I have heard about  the GenomeFeatures package, anybody know if is the best
> methods ?
> Thanks,
> Arnaud
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