[BioC] can't install with biocLite

[Patrick Aboyoun]

Kurt,
Could you be more specific in your e-mails by providing details on what 
actions you took and a copy of what output you received? Which server 
are you referring to when you say

"I looked at the server it was trying to install the biaries (sic) from 
and there is no longer a macosx directory."


Patrick


Marek, Kurt wrote:
> It downloads but never installs. I looked at the server it was trying  
> to install the biaries from and there is no longer a macosx directory.  
> I changed the biocLite flag type to source and it installed fine.  
> Perhaps the osx binaries just aren't available for 2.5 yet. Anyway,  
> problem solved. Thanks for your replies.
>
> Kurt
>
> On Dec 8, 2009, at 7:22, "Steve Lianoglou" <mailinglist.honeypot at gmail.com 
>  > wrote:
>
>   
>> Hi Kurt,
>>
>> On Dec 7, 2009, at 7:48 PM, Vincent Carey wrote:
>>
>>     
>>> it is a warning.  it is not an error.  it implies that a certain set
>>> of resources has not been compiled for a specific version
>>>       
>> To add to this: if you let biocLite continue to run, you should see  
>> it starting to download + install the necessary packages.
>>
>> Do you?
>>
>> -steve
>>
>>     
>>> On Mon, Dec 7, 2009 at 3:11 PM, Marek, Kurt <kmarek at ucsd.edu> wrote:
>>>       
>>>> I'm having trouble installing 2.5 on R 2.10 on a Mac running 10.6.  
>>>> I get the following error:
>>>> Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.10
>>>>
>>>> when I enter:
>>>> source("http://bioconductor.org/biocLite.R")
>>>> biocLite()
>>>>
>>>> I initially thought this was because I was running R64, but I re- 
>>>> installed R and am still getting the same error. Can anyone help me?
>>>>
>>>> thanks!
>>>> Kurt
>>>>
>>>>
>>>>
>>>>
>>>> Kurt Marek, Ph.D.
>>>>
>>>> Division of Biological Sciences, Neurobiology Section
>>>> University of California, San Diego
>>>>
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>>>>
>>>>         
>>> _______________________________________________
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>>>       
>> --
>> Steve Lianoglou
>> Graduate Student: Computational Systems Biology
>>  |  Memorial Sloan-Kettering Cancer Center
>>  |  Weill Medical College of Cornell University
>> Contact Info: http://cbio.mskcc.org/~lianos/contact
>>
>>     
>
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