[BioC] Illumina Detection Pvalues

[Lana Schaffer]

Hi,
I would like to know if someone has experience
with the Illumina Detection Pvalues.  Illlumina does
not take into account the GC content but just the
distribution of a mixture of negative controls. 
For 50-mers is it not important to account for
the GC-content?  Is there a threshold for detection
that has been verified? 

Lana Schaffer
Biostatistics/Informatics
The Scripps Research Institute
DNA Array Core Facility
La Jolla, CA 92037
(858) 784-2263
(858) 784-2994
schaffer at scripps.edu