[BioC] Getting dChip SNP intensity in BioC?

[Henrik Bengtsson]

Hi,

see recent BioC thread 'dChip LOH and copy number analysis' on Sept 17, 2008:

  https://stat.ethz.ch/pipermail/bioconductor/2008-September/024208.html

Could be what you are looking for.

/Henrik

On Thu, Sep 25, 2008 at 12:25 PM, Jeff Gentry <jgentry at jimmy.harvard.edu> wrote:
> Hi there ...
>
> I'm probably just overlooking something obvious, but I didn't see this in
> the oligo package.  I was hoping to be able to generate the signal
> values for samples in SNP datasets in the same manner as dChip &
> genepattern do.  As an example, the Genepattern .SNP file format each
> sample has both an intensity and a call column.
>
> Thanks
> -J
>
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