[BioC] mas5calls p-values

James W. MacDonald jmacdon at med.umich.edu
Thu Sep 11 19:14:39 CEST 2008


Hi Salih,

The p-values are stored in the se.exprs part of the assayData slot of 
the ExpressionSet. You access these things using the assayDataElement() 
accessor, so you can get them thusly (assuming your ExpressionSet is 
called exprs):

pvalues <- assayDataElement(exprs, "se.exprs")

Best,

Jim



Salih Tuna wrote:
> Hi,
> i am new to R and Bioconductor. i am trying to use the mas5calls and want
> to view the p-values. I can only see the restuls as P/A.
> is there any way to see the actual p-values?
> 
> thank you in advance
> salih
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Hildebrandt Lab
8220D MSRB III
1150 W. Medical Center Drive
Ann Arbor MI 48109-0646
734-936-8662



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