[BioC] DNASuffixArray

[Gabriel Valiente]

I post it again, in the hope Herve Pages is already back. Thanks,

Gabriel

> The guy who is most on top of this is undoubtedly Herve Pages from  
> FHCRC, since he wrote it. He is on vacation until Sep. 1st. Of  
> course, there may be other people with details on this.
>
> Kasper
>
> On Aug 29, 2008, at 10:35 AM, Gabriel Valiente wrote:
>
>> Dear all,
>>
>> there was a DNASuffixArray function call to C code (biostring.c)  
>> in package
>>
>> Biostrings 1.1.1 (BioConductor 1.6)
>> Biostrings 1.4.0 (BioConductor 1.7)
>> Biostrings 2.0.3 (BioConductor 1.8)
>> Biostrings 2.2.1 (BioConductor 1.9)
>>
>> but then, still a function call but no C code anymore, in package
>>
>> Biostrings 2.4.8 (BioConductor 2.0)
>> Biostrings 2.6.6 (BioConductor 2.1)
>> Biostrings 2.8.18 (BioConductor 2.2)
>> Biostrings 2.9.66 (BioConductor 2.3)
>>
>> Can someone please briefly explain what happened to  
>> DNASuffixArray? Beside being interested in using it, I would also  
>> like to properly cite this implementation in a forthcoming book  
>> and thus, need to be sure about any details. Thanks,
>>
>> Gabriel
>>
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