[BioC] Problem installing Biobase on Solaris
nuin at genedrift.org
Thu Sep 4 23:37:58 CEST 2008
Thanks. Just tried installing XML (Matrix requires some graphical
libraries) and it worked fine. I am starting to think that the Biobase
problem might be related to the GCC version I am using, 3.4.3. I might
need to upgrade it and test.
Thanks a lot.
Herve Pages wrote:
> Hi Paulo,
> The C code in Biobase makes no direct reference to the __builtin_isnan
> so your problem doesn't seem to be specific to the Biobase package and
> most likely happen with other packages containing native code.
> Try to install the XML or Matrix or whatever package with C code from the
> CRAN repository. If it doesn't work then you might try to report the
> on the R-devel mailing list (more audience there so more chance that
> will have access to a Solaris machine). Don't forget to report your
> sessionInfo() + exact version of Solaris + arch + compiler that you
> are using.
> Good luck!
> Paulo Nuin wrote:
>> Hi everyone
>> This is my first post to the list. I had experience installing and
>> using Bioconductor on Linux and Windows systems but I am encountering
>> problems installing Biobase on Solaris running on Sparc. The package
>> compilation works fine, with only a warning
>> warning: implicit declaration of function `__builtin_isnan'
>> the help files are generated but in the end it fails with an error
>> also related __builtin_isnan
>> ** building package indices ...
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>> unable to load shared library
>> ld.so.1: R: fatal: relocation error: file
>> /usr/local/lib/R/library/Biobase/libs/Biobase.so: symbol
>> __builtin_isnan: referenced symbol not found
>> Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne ->
>> Execution halted
>> ERROR: installing package indices failed
>> Any help is appreciated. Thanks in advance
>> Bioconductor mailing list
>> Bioconductor at stat.math.ethz.ch
>> Search the archives:
More information about the Bioconductor