[BioC] Dmel. Gene Chip 2 tiling array CDF ; Drosophila melanogaster BDGP Release 5 annotation

[Steve Lianoglou]

There was also a recent thread about trying to deal wit CDFs for  
tiling arrays here:

http://thread.gmane.org/gmane.science.biology.informatics.conductor/19119

-steve

On Jul 30, 2008, at 8:21 PM, Marc Carlson wrote:

> Hi Mythily,
>
> Our annotation packages are currently based upon a combination of  
> sources from repositories at NCBI, UCSC, and Flybase to name a few.   
> We do not presently gather any data from the BDGP.  However, if you  
> go the the BDGP website, I notice that they will actually refer you  
> to flybase for the latest annotations so perhaps what we offer is  
> not far from what you had in mind after all?
>
> You can learn more about how to use our annotation packages here.   
> And since it sounds like you want a custom annotation package, you  
> should be able to build one by following the instructions in the  
> SQLForge vignette at this same website:
>
> http://www.bioconductor.org/packages/2.2/bioc/html/AnnotationDbi.html
>
>
> Let me know if you have further questions,
>
>
> Marc
>
>
>
>
>
> mythilyg ganapathi wrote:
>> Hello,
>> I am a new user of bioconductor. It will be great if it can  
>> confirmed whether the CDF and Annotation packages are available for  
>> GeneChip® Drosophila Tiling 2.0R Array and BDGP Release 5   
>> annotation, respectively. If they are not available could anybody  
>> specify how to integrate them in bioconductor (I am using affyImGUI  
>> software)
>> Thanks
>> Mythily
>>
>>
>>
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>>
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