[BioC] useMart alterations

[Mark Robinson]

Amanda.

useMart is Ensembl/Biomart-centric ... how about just using RMySQL to  
create tables of all the info you need for GenomeGraphs?

(http://cran.ms.unimelb.edu.au/web/packages/RMySQL/index.html)

Mark



On 22/07/2008, at 2:28 PM, Amanda Miotto wrote:

>
> Dear All
>
> Using GenomeGraphs, I would like to be able to make useMart to query a
> local db not Ensembl, perhaps through mySQL. Would you be able to  
> point me
> in the direction of some documentation on how to set this up?
>
> Thank you.
>
> Amanda Miotto
> a.miotto at griffith.edu.au
>
> Software Engineer.
> Research Computing Services
> INFORMATION SERVICES
> Griffith University, NATHAN 4111, AUSTRALIA
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------------------------------
Mark Robinson
Epigenetics Laboratory, Garvan
Bioinformatics Division, WEHI
e: m.robinson at garvan.org.au
e: mrobinson at wehi.edu.au
p: +61 (0)3 9345 2628
f: +61 (0)3 9347 0852