[BioC] cellHTS2 writeReport error

[Becky Saunders]

Hi there,
 
Could someone help me with the following error when I try to execute the
writeReport command using cellHTS2 version 2.4.0, R version 2.7.0.
 
out <- writeReport(cellHTSlist=list(raw=x), outdir=file.path(outHTMLDir,
"raw"), force=TRUE)

Error in plotScreen(ldat, zrange = range(mtW), fill = wellCols, nx =
pdim(x)[["ncol"]],  :  'fill' must have length >=2 since it is used to
compute the color ramp that represent the values in z.

I think the problem originates because I have not set a positive control
in my plateConf file, as when I run the exact same input files with a
positive control set it works fine. Is it possible to run the analysis
without a positive control set?
 
Also is it possible to set an argument to not include the
configurationAsScreenPlot figure in the report, as you can do for
plotPlateArgs and imageScreenArgs when you call writeReport?
 
Many Thanks,
 
Becky 


===========R Console =================

> x <- readPlateList("plateList.txt", name="Automated Preliminary
Analysis", path=dataPath)
Automated Preliminary Analysis: found data in 8 x 12 (96 well) format.

Reading 1: plate_1.txt
Read 1 plates.             
 
> descripFile = file.path(dataPath, "description.txt")
> confFile= file.path(dataPath, "plateConf.txt")
> x <- configure(x, confFile=confFile, descripFile=descripFile)
> out <- writeReport(cellHTSlist=list(raw=x), outdir=file.path(dataPath,
"raw"), force=TRUE)
Error in plotScreen(ldat, zrange = range(mtW), fill = wellCols, nx =
pdim(x)[["ncol"]],  : 
  'fill' must have length >=2 since it is used to compute the color ramp
that represent the values in z.


=====================================
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London Research Institute 
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