[BioC] LD plots
Boks, M.P.M.
M.P.M.Boks at umcutrecht.nl
Wed Jul 9 17:56:26 CEST 2008
Dear R-friends,
I am stuck making an LD plot of a small genotype set:
An exert of my data (genotypes)
>tempped.exert
V27/V28 V33/V34 V39/V40 V41/V42
1 B/B B/B A/A B/B
2 B/A B/B A/B B/B
3 B/B B/B A/A B/B
4 B/A B/A A/B B/A
5 B/B B/B A/A B/B
I thought he LDheatmap package would be of use
>library(LDheatmap)
>LDheatmap(tempped.exert)
Gives me the desired LD map of the first two columns only.
How do I make it to take all 4 SNP's/colomns?
Your help is highly appreciated,
Thanks,
Marco
More information about the Bioconductor
mailing list