[BioC] GEOquery

[Sean Davis]

On Mon, Jul 7, 2008 at 11:34 PM, Harpreet Saini <hs1 at sanger.ac.uk> wrote:
> Hi,
>
> I am trying to obtain GSE matrix files as expression sets by turning the GSEMatrix true as following:
>
>>gse<-getGEO("GSE2553", GSEMatrix = TRUE)
>
> I am getting the following error:
> Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings,  :
>  line 1 did not have 8 elements
> In addition: Warning messages:
> 1: In if (nchar(val) == nchar(x)) return(NA) :
>  the condition has length > 1 and only the first element will be used
> 2: In if (nchar(val) == nchar(x)) return(NA) :
>  the condition has length > 1 and only the first element will be used
>
> Any help?

Thanks, Harpreet, for the report.  Could you send the output of
sessionInfo()?  On R-devel, I am not able to reproduce the error, so
it would help to have the further detail.

Sean