[BioC] DNASuffixArray
Kasper Daniel Hansen
khansen at stat.berkeley.edu
Fri Aug 29 22:59:55 CEST 2008
The guy who is most on top of this is undoubtedly Herve Pages from
FHCRC, since he wrote it. He is on vacation until Sep. 1st. Of course,
there may be other people with details on this.
Kasper
On Aug 29, 2008, at 10:35 AM, Gabriel Valiente wrote:
> Dear all,
>
> there was a DNASuffixArray function call to C code (biostring.c) in
> package
>
> Biostrings 1.1.1 (BioConductor 1.6)
> Biostrings 1.4.0 (BioConductor 1.7)
> Biostrings 2.0.3 (BioConductor 1.8)
> Biostrings 2.2.1 (BioConductor 1.9)
>
> but then, still a function call but no C code anymore, in package
>
> Biostrings 2.4.8 (BioConductor 2.0)
> Biostrings 2.6.6 (BioConductor 2.1)
> Biostrings 2.8.18 (BioConductor 2.2)
> Biostrings 2.9.66 (BioConductor 2.3)
>
> Can someone please briefly explain what happened to DNASuffixArray?
> Beside being interested in using it, I would also like to properly
> cite this implementation in a forthcoming book and thus, need to be
> sure about any details. Thanks,
>
> Gabriel
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
More information about the Bioconductor
mailing list