[BioC] copy number for Affy 6.0

[Rob Scharpf]

Hi,

For the Affy 6.0 platform, I would like to know the default tool for  
obtaining copy number estimates prior to smoothing across loci (raw  
copy number).  If CNAT is the default, is there a command-line  
version of this tool available, or an implementation of a CNAT- 
equivalent in R?

Thanks,

Rob