[BioC] R crashes after image array plots hgu133plus2 in R2.6.0

[Richard Friedman]

correction to post below:

I tried

image(Data[,1])

where data was an affybatch object

Rich
On Oct 31, 2007, at 12:31 PM, Richard Friedman wrote:

> Dear Bioconductor Users.
>
> 	I am trying to do Image array plots of hgu133plus2 chips with the
> new release of Bioconductor (includiong affy 1.16.0)
> under R 2.60 on a Mac (10.4) .  I am using the command
>
>> image(eset[,1])
>
> and I get an image array. But R crashes after the second image.
>
> I then tried it with the latest  version of R and Bioconductor on  
> my PC,
> this time with AffylmGUI ( I have not yet got the GUI to work on the
> Mac, but
> that is not the problem I am writing about now).
>
> R didn't crash but again after  2 images I couldn't get another image.
>
> I seemed to remember this operation working properly with earlier
> versions
> of R and Bioconductor on the same chip. So I tried it with AffylmGUI
> 1.5.4
> using Limma 2.7.6  unde R 2.31 on the PC. I was just able to get 3  
> chip
> images in a row without mishap.
>
> So it seems that I am doing something that once worked and now
> no longer does.
>
> Any suggestions would be appreciated.
>
> Thanks and best wishes,
> Rich
> --------------------------------------------------------
> Richard A. Friedman, PhD
> Biomedical Informatics Shared Resource
> Lecturer
> Department of Biomedical Informatics
> Educational Coordinator
> Center for Computational Biology and Bioinformatics
> National Center for Multiscale Analysis of Genomic Networks
> Box 95, Room 130BB or P&S 1-420C
> Columbia University Medical Center
> 630 W. 168th St.
> New York, NY 10032
> (212)305-6901 (5-6901) (voice)
> friedman at cancercenter.columbia.edu
> http://cancercenter.columbia.edu/~friedman/
>
> "The last 250 pages of the last Harry Potter
> book took place in one day because alot
> happened in that day. All of Ulysses takes
> place in one day and nothing happened in that day."
> -Rose Friedman, age 11
>
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