[BioC] Error: could not find function "normaliseIllumina"[beadarray package]

[Matt Ritchie]

Dear Yogi,

The function normaliseIllumina() was added after version 1.4.0, hence the
error message.

I'd recommend you upgrade to the latest release version of beadarray
(1.6.0).  You'll need to install the latest version of R (2.6.0) as well.

Best wishes,

Matt

> Dear all,
> 
>  
> 
> I am very new to illumina analysis and I get an error every time I run
> this command
> 
>  
> 
>> BSData.log2.quantile = normaliseIllumina(BSData, method="quantile",
> transform="log2")
> 
> Error: could not find function "normaliseIllumina"
> 
>  
> 
> Any help would be greatly appreciated
> 
>  
> 
> Thanks heaps
> 
> Yogi
> 
>  
> 
>  
> 
> R version 2.5.1 (2007-06-27)
> 
> i386-pc-mingw32 
> 
>  
> 
> locale:
> 
> LC_COLLATE=English_Australia.1252;LC_CTYPE=English_Australia.1252;LC_MON
> ETARY=English_Australia.1252;LC_NUMERIC=C;LC_TIME=English_Australia.1252
> 
>  
> 
> attached base packages:
> 
> [1] "grid"      "tools"     "stats"     "graphics"  "grDevices" "utils"
> "datasets"  "methods"
> 
> [9] "base"     
> 
>  
> 
> other attached packages:
> 
>    beadarray beadarraySNP  quantsmooth      lodplot     quantreg
> SparseM  geneplotter      lattice
> 
>      "1.4.0"      "1.2.0"      "1.2.0"        "1.1"       "4.08"
> "0.73"     "1.14.0"    "0.15-11"
> 
>        limma         lumi     annotate         mgcv         affy
> affyio      Biobase
> 
>     "2.10.5"      "1.2.0"     "1.14.1"     "1.3-25"     "1.14.2"
> "1.4.1"     "1.14.1"