[BioC] lumi: LumiBatch slots don't match documentation
Gordon Smyth
smyth at wehi.EDU.AU
Fri Oct 26 10:25:21 CEST 2007
LumiBatch objects contain two slots (controlData and QC) which are
not mentioned on the documentation page help("LumiBatch-class"). Yet
they don't contain the slot "summary" which is described on the help page.
What are controlData and QC and how are they used?
Is summary defunct?
Gordon
> library(lumi)
> a <- new("LumiBatch")
> slotNames(a)
[1]
"history" "controlData" "QC" "assayData"
[5]
"phenoData" "featureData" "experimentData" "annotation"
[9] ".__classVersion__"
> sessionInfo()
R version 2.6.0 (2007-10-03)
i386-pc-mingw32
locale:
LC_COLLATE=English_Australia.1252;LC_CTYPE=English_Australia.1252;LC_MONETARY=English_Australia.1252;LC_NUMERIC=C;LC_TIME=English_Australia.1252
attached base packages:
[1] tools stats graphics grDevices
utils datasets methods base
other attached packages:
[1]
lumi_1.4.0 annotate_1.16.0 xtable_1.5-1
AnnotationDbi_1.0.0
[5]
RSQLite_0.6-3 DBI_0.2-3 mgcv_1.3-27
affy_1.16.0
[9] preprocessCore_1.0.0 affyio_1.6.0 Biobase_1.16.0
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