[BioC] suppress messages in rma

Georg Otto georg.otto at tuebingen.mpg.de
Thu Oct 25 17:14:53 CEST 2007


Hi,




how can I suppress the messages printed by the rma function
(Background correcting....etc), since verbose=FALSE is ignored?

Best,

Georg

> eset<-rma(Data, verbose=FALSE)

Background correcting
Normalizing
Calculating Expression

> sessionInfo()
R version 2.6.0 (2007-10-03) 
x86_64-redhat-linux-gnu 

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
[1] zebrafishcdf_2.0.0   affy_1.16.0          preprocessCore_1.0.0
[4] affyio_1.6.1         Biobase_1.16.1      

loaded via a namespace (and not attached):
[1] simpleaffy_2.14.05



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