[BioC] Arabidopsis GO Pie Charts

[Naomi Altman]

Thanks, Naomi

At 12:35 PM 10/13/2007, you wrote:
>Naomi,
>
>The GOHyperGAll_Subset() and pie() steps on this page generate GO_Slim-type
>pie charts for Arabidopsis gene ids (AT3G12345):
>http://faculty.ucr.edu/~tgirke/Documents/R_BioCond/R_BioCondManual.html#GOHyperGAll
>
>Thomas
>
>On Fri 10/12/07 23:55, Naomi Altman wrote:
> > I have been trying to us goTools (but any other package would be
> > fine) to produce gene category pie charts for arabidopsis genes.  My
> > gene lists are in the format AT3G12345 etc. but most of these could
> > be mapped to GeneChip probesets if that would help.
> >
> > Naomi S. Altman                                814-865-3791 (voice)
> > Associate Professor
> > Dept. of Statistics                              814-863-7114 (fax)
> > Penn State University                         814-865-1348 (Statistics)
> > University Park, PA 16802-2111
> >
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> >
>
>--
>Thomas Girke
>Assistant Professor of Bioinformatics
>Director, IIGB Bioinformatic Facility
>Center for Plant Cell Biology (CEPCEB)
>Institute for Integrative Genome Biology (IIGB)
>Department of Botany and Plant Sciences
>1008 Noel T. Keen Hall
>University of California
>Riverside, CA 92521
>
>E-mail: thomas.girke at ucr.edu
>Website: http://faculty.ucr.edu/~tgirke
>Ph: 951-827-2469
>Fax: 951-827-4437

Naomi S. Altman                                814-865-3791 (voice)
Associate Professor
Dept. of Statistics                              814-863-7114 (fax)
Penn State University                         814-865-1348 (Statistics)
University Park, PA 16802-2111