[BioC] GO classification

[Steffen Durinck]

Hi Ganiraju,

I don't think there is an R package for mapping a set of GO identifiers to GO slim but it should be possible to write R code that does this mapping by using the GO annotation packages.  

Alternatively you could use the map2slim.pl perl script see:

http://search.cpan.org/~cmungall/go-perl/scripts/map2slim

This script is available in the go-perl module at:
http://search.cpan.org/~cmungall/go-perl/

Cheers,
Steffen

----- Original Message -----
From: Ganiraju <ganiraju at gmail.com>
Date: Tuesday, October 9, 2007 12:40 pm
Subject: [BioC] GO classification
To: bioconductor at stat.math.ethz.ch

> hi,
> 
> I got a set of  significant GOids by running my data using 
> GOhypergtest of
> Gostats. Now im trying to classify these GO ids using the GO_slim
> classifier. Is there any package in R which can accomplish this job??
> 
> Thanks
> Gani
> 
> 	[[alternative HTML version deleted]]
> 
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