[BioC] processCGH in snapCGH package

J-C. Marioni jcm68 at cam.ac.uk
Fri Oct 5 23:02:38 CEST 2007


Hi Jianmin,

Thanks for this information - I haven´t used this function for a while and 
hadn´t realised there was an error. I will have a look at this next week 
and commit a change to Bioconductor.

Thanks,
John

John

>Hello, John,
> 
>I read your post on BioC mialing list and I don't have an account
>there.  So I have similar problem to process agilent 244k arrays.  And
>after check the code, I found that readPositionInfo() has something
>missing: the Position information.  So what I have done to fix the
>problem is as follows:
> 
>RG2$genes$Position = (RG2$genes$Start + RG2$genes$End)/2
> 
>before backgroundCorrection.
> 
>Hope it helps.
> 
>Best Regards,
> 
>Jianmin Wang
>
>
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