[BioC] processCGH in snapCGH package
J-C. Marioni
jcm68 at cam.ac.uk
Fri Oct 5 23:02:38 CEST 2007
Hi Jianmin,
Thanks for this information - I haven´t used this function for a while and
hadn´t realised there was an error. I will have a look at this next week
and commit a change to Bioconductor.
Thanks,
John
John
>Hello, John,
>
>I read your post on BioC mialing list and I don't have an account
>there. So I have similar problem to process agilent 244k arrays. And
>after check the code, I found that readPositionInfo() has something
>missing: the Position information. So what I have done to fix the
>problem is as follows:
>
>RG2$genes$Position = (RG2$genes$Start + RG2$genes$End)/2
>
>before backgroundCorrection.
>
>Hope it helps.
>
>Best Regards,
>
>Jianmin Wang
>
>
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