[BioC] reading many affy U133 Plus_2.0

[Mark Robinson]

David,

You might have a look at the R package 'aroma.affymetrix' ... you  
should be able to read/process/analyze 100s of affy chips.  I  
regularly process >50 exon arrays, which are far larger than U133s.   
I believe you can do it all in less than 500M RAM.

Full details are at:
http://groups.google.com/group/aroma-affymetrix

Cheers,
Mark


On 05/10/2007, at 9:57 PM, <darteta001 at ikasle.ehu.es>  
<darteta001 at ikasle.ehu.es> wrote:

> Dear list,
>
> In order to normalise my data using fitPLM(), I need to create an
> affybatch using ReadAffy(). This time I think justRMA() is not an
> option I can use.
>
> Has anyone been successful at reading in a large group of Plus chips
> (say 100) using ReadAffy() and the normalise them using fitPLM() on
> a "normal" PC on Windows? What amount of memory is needed for it?
> Any examples on how many chips you might have loaded with memory
> details would be very appreciated.
>
> Regards,
>
> David
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/ 
> gmane.science.biology.informatics.conductor