[BioC] About beadarray package

[Johnstone, Alice]

What is the command you are using, and what do the first few lines of
your data file look like? 


________________________________

	From: ssls sddd [mailto:ssls.sddd at gmail.com] 
	Sent: Tuesday, 2 October 2007 4:01 p.m.
	To: Johnstone, Alice
	Cc: bioconductor at stat.math.ethz.ch
	Subject: Re: [BioC] About beadarray package
	
	
	The result of sessionInfo () reads as below. But I think it is
up-to-date.
	
	Thanks!
	
	Alex
	
	> sessionInfo()
	R version 2.5.1 (2007-06-27) 
	i386-pc-mingw32 
	
	locale:
	LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
	
	attached base packages:
	[1] "grid"      "tools"     "stats"     "graphics"  "grDevices"
"utils"    
	[7] "datasets"  "methods"   "base"     
	
	other attached packages:
	   beadarray beadarraySNP  quantsmooth      lodplot     quantreg
SparseM 
	     "1.4.0"      " 1.2.0"      "1.2.0"        "1.1"
"4.10"       "0.73" 
	        affy       affyio  geneplotter      lattice     annotate
Biobase 
	    "1.14.2"      " 1.4.1"     "1.14.0"    "0.15-11"
"1.14.1"     "1.14.1" 
	       limma 
	    "2.10.5" 
	
	
	
	On 10/1/07, Johnstone, Alice <Alice.Johnstone at esr.cri.nz> wrote:


		What version of beadarray are you using?  You might need
to update it to
		the latest version.
		To ensure you get prompt help your post needs to include
the output of:
		
		sessionInfo()
		
		
		Cheers
		Alice
		
		> -----Original Message-----
		> From: bioconductor-bounces at stat.math.ethz.ch
		> [mailto: bioconductor-bounces at stat.math.ethz.ch
<mailto:bioconductor-bounces at stat.math.ethz.ch> ] On Behalf Of ssls sddd
		> Sent: Tuesday, 2 October 2007 2:43 p.m.
		> To: bioconductor at stat.math.ethz.ch
		> Subject: [BioC] About beadarray package 
		>
		> Hello! I tried to read in data using the function
		> readBeadSummaryData() but I got the error message
like:
		>
		> Error in `rownames<-`(`*tmp*`, value = c(41306L,
35002L,
		> 16863L, 12131L,  : 
		>         attempt to set rownames on object with no
dimensions
		>
		>
		> I tried the sample data called 'raw_data.csv' and got
quite
		> similar error
		> message:
		>
		> Error in `rownames<-`(`*tmp*`, value = c(1L, 2L, 3L,
4L, 5L, 
		> 6L, 7L, 8L,  :
		>         attempt to set rownames on object with no
dimensions
		>
		>
		> can anyone suggest how to correct this?
		>
		> Thank you very much!
		>
		> Alex
		> 
		>       [[alternative HTML version deleted]]
		>
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