[BioC] limma eBayes: how to determine goodness of fit?
Paul Shannon
pshannon at systemsbiology.org
Thu May 31 21:38:43 CEST 2007
A summary of an lm result includes some readily-understood
goodness of fit information:
1) Residual standard error
2) Multiple R-Squared
3) Adjusted R-Squared
4) F-statistic
With limma, and eBayes, I deduce (incorrectly?) that efit$F and efit$F.p.value
convey information similar to number 4 above. How about the first three
measures -- is there any way to get equivalent information for the linear
model eFit produces?
Thanks!
- Paul
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