[BioC] bug with AnnBuilder and parser
Nianhua Li
nli at fhcrc.org
Wed May 9 20:08:40 CEST 2007
Hi, Gregory,
Could you try invoking ABPkgBuilder directly? Here is a sample script (taken
from your email) for example:
library (AnnBuilder)
data_gb = read.table("probeset_gb.txt" , sep = "\t", header=FALSE, as.is=TRUE)
mybase = file.path("probeset_gb.txt")
mybasetype= "gb"
mydir = getwd()
ABPkgBuilder(baseName= mybase,
baseMapType = mybasetype,
pkgName = "monPackageAnnoted",
pkgPath = mydir,
organism = "Homo sapiens",
version = "1.0.0",
author = list (authors = "Greg_Voisin, Amelie Ouellet",
maintainer = "voisingreg at ...")
)
You have to modify the maintainer email since it is marked by gmane. If it still
doesn't work, please write back with the output of "sessionInfo()".
thanks
nianhua
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